1. Pu J, Sun H, Qu Y, Wang C, Gao W, Zhu J, Sun Y, Bi Y, Huang Y, Chang KC, Cui J, LiuJ. (2017) M gene reassortment in H9N2 influenza virus promotes early infection andreplication: contribution to rising virus prevalence in chickens in China. J Virol 91: e02055-16.
  2. Jia Y, Yang J, Wang Z, Du Y, Cui J, Wang L, Guo F, Yang M, Han S, Zhu Q. (2017)Genetic properties and pathogenicity of a novel reassortant H10N5 influenza virus from wild birds. Arch Virol 162:1349-1353.
  3. Li X, Yang J, Liu B, Jia Y, Guo J, Gao X, Weng S, Yang M, Wang L, Wang LF, Cui J*, Chen H*, Zhu Q*. (2016) Co-circulation of H5N6, H3N2, H3N8, and Emergence of Novel Reassortant H3N6 in a Local Community in Hunan Pro vince in China. Sci Rep 6:25549.
  4. Zhou P, Tachedjian M, Wynne JW, Boyd D, Cui J, Smith I, Cowled C, Ng JH, Mok L, Michalski WP, Mendenhall IH, Tachedjian G, Wang LF, Baker ML . (2016) Contraction of the type I IFN locus and unusual constitutive expression of IFN-ain bats. Proc Natl Acad Sci USA 113:2696-2701.
  5. Ahn M, Cui J, Irving AT, Wang LF. (2016)Unique Loss of the PYHIN Gene Family in Bats Amongst Mammals: Implications for Inflammasome Sensing. Sci Rep 6:21722.
  6. Ng JH, Tachedjian M, Deakin J, Wynne JW, Cui J, Haring V, Broz I, Chen H, Belov K, Wang LF, Baker ML. (2016) Evolution and comparative analysis of the bat MHC -I region. Sci Rep 6:21256.
  7. Cui J*, Wang LF. (2015) Genomic Mining Reveals Deep Evolutionary Relationships between Bornaviruses and Bats. Viruses 7:5792-5800.
  8. Cui J*, Tachedjian G, Wang LF*. (2015) Bats and Rodents Shape Mammalian Retroviral Phylogeny. Sci Rep 5:16561.
  9. Lemos de Matos A, Sousa-Pereira P, Lissovsky AA, Loo WV, Melo -Ferreira J, Cui J, Esteves PJ. (2015) Endogenization of mouse mammary tumor virus (MMTV) –like elements in genomes of pikas ( Ochotona sp.). Virus Res 210:22-26.
  10. Cui J*, Zhao W, Huang Z, Jarvis ED, Gilbert M, Walker PJ, Holmes EC, Zhang G *. (2014) Low frequency of paleoviral i nfiltration across the avian phylogeny. Genome Biol 15:539.
  11. Cui J, Schlub TE, Holmes EC. (2014). An allometric relationship between the genome length and virion volume of viruses. J Virol 88:6403-6410.
  12. Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, ?deen A, Cui J, Zhou Q, Xu L, Pan H, Wang Z, Jin L, Zhang P, Hu H, Yang W, et al. (2014) Comparative genomics reveals insights into avian genome evolution and adaptation. Science 346:1311-1320.
  13. Hayward JA #, Tachedjian M #, Cui J #, Field H, Holmes EC, Wang LF &Tachedjian G. (2013) Identification of diverse full -length endogenous betaretroviruses in megabats and microbats. Retrovirology 10:35.
  14. Wang L, Yin Q, He G, Rossiter SJ, Holmes EC, Cui J*. (2013) Ancient invasion of an extinct gammaretrovirus in cetaceans. Virology 441:66-69.
  15. Cui J*, Eden JS, Holmes EC, Wang LF. (2013). Adaptive evolution of bat dipeptidyl peptidase 4 (DPP4): implications for the origin and emergence of Middle East respiratory syndrome coronavirus. Virol J 10:304.
  16. Pan YH, Zhang Y, Cui J, Liu Y, McAllan BM, Liao CC, Zhang S. (2013). Adaptation of phenylalanine and tyrosine catabolic pathway to hibernation in bats. PLoS ONE 8:e62039.
  17. Nielsen ACY, Gyhrs ML, Holmes EC, Cui J*. (2012). Co-circulation and persistence of genetically distinct Saffold viruses, Denmark. Emerg Infect Dis 18:1694-1696.
  18. Cui J, Holmes EC. (2012). Endogenous hepadnaviruses in the genome of the budgerigar (Melopsittacus undulatus) and the evolution of avian hepadnaviruses. J Virol 86:7688-7691.
  19. Cui J, Holmes EC. (2012). Endogenous lentiviruses in the ferret genome. J Virol 86:3383-3385.
  20. Cui J, Tachedjian M, Wang L, Tachedjian G, Wang LF, Zhang S. (2012). Discovery of retroviral homologs in bats: implications for the origin of mammalian gammaretroviruses. J Virol 86:4288-4293.
  21. Cui J*, Tachedjian G, Tachedjian M, Holmes EC, Zhang S, Wang LF. (2012). Identification of diverse groups of endogenous gammaretroviruses in mega and microbats. J Gen Virol 93:2037-2045.
  22. Cui J, Holmes EC. (2012). Evidence for an endogenous papillomavirus -like element in the platypus genome. J Gen Virol93:1362-1366.
  23. Cui J, Holmes EC. (2012) Endogenous RNA viruses of plants in insect genomes. Virology 427:77-79.
  24. Cui J, Pan YH, Zhang Y, Jones G, Zhang S. (2011). Progressive pseudogenization: vitamin C synthesis and its loss in bats. Mol Biol Evol 28:1025-1031.
  25. Cui J, Yuan X, Wang L, Jones G, Zhang S. (2011). Recent loss of vitamin C biosynthesis ability in bats. PLoS ONE 6:e27114.
  26. Song J, Shen D, Cui J*, Zhao B*. (2010). Accelerated evolution of PRRSV during recent outbreaks in China. Virus Genes 41:241-245.
  27. He G, He B, Racey PA, Cui J*. (2010). Positive selection of the bat interferon alpha gene family. Biochem Genet 48:840-846.
  28. Cui J, Counor D,Shen D, Sun G, He H, Deubel V, Zhang S. (2008). Detection of Japanese encephalitis virus antibodies in bats in Southern China. Am J Trop Med Hyg 78:1007-1011.
  29. Cui J, Han N, Streicker D, Li G, Tang X, Shi Z, Hu Z, Zhao G, Fontanet A, Guan Y, Wang L, Jones G, Field HE, Daszak P, Zhang S. (2007). Evolutionary relationships between bat coronaviruses and their hosts. Emerg Infect Dis 13:1526-1532.